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Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe

Identifieur interne : 000065 ( 2020/Analysis ); précédent : 000064; suivant : 000066

Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe

Auteurs : Paola Stefanelli [Italie] ; Giovanni Faggioni [Italie] ; Alessandra Lo Presti [Italie] ; Stefano Fiore [Italie] ; Antonella Marchi [Italie] ; Eleonora Benedetti [Italie] ; Concetta Fabiani [Italie] ; Anna Anselmo [Italie] ; Andrea Ciammaruconi [Italie] ; Antonella Fortunato [Italie] ; Riccardo De Santis [Italie] ; Silvia Fillo [Italie] ; Maria Rosaria Capobianchi [Italie] ; Maria Rita Gismondo [Italie] ; Alessandra Ciervo [Italie] ; Giovanni Rezza [Italie] ; Maria Rita Castrucci [Italie] ; Florigio Lista [Italie]

Source :

RBID : PMC:7140597

Descripteurs français

English descriptors

Abstract

Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient’s sequence clustered with sequences from Germany while the tourist’s sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients’ sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.


Url:
DOI: 10.2807/1560-7917.ES.2020.25.13.2000305
PubMed: 32265007
PubMed Central: 7140597


Affiliations:


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PMC:7140597

Le document en format XML

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<name sortKey="Fillo, Silvia" sort="Fillo, Silvia" uniqKey="Fillo S" first="Silvia" last="Fillo">Silvia Fillo</name>
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<name sortKey="Ciervo, Alessandra" sort="Ciervo, Alessandra" uniqKey="Ciervo A" first="Alessandra" last="Ciervo">Alessandra Ciervo</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1">Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome</wicri:regionArea>
<placeName>
<settlement type="city">Rome</settlement>
<region nuts="2">Latium</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Rezza, Giovanni" sort="Rezza, Giovanni" uniqKey="Rezza G" first="Giovanni" last="Rezza">Giovanni Rezza</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1">Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome</wicri:regionArea>
<placeName>
<settlement type="city">Rome</settlement>
<region nuts="2">Latium</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Castrucci, Maria Rita" sort="Castrucci, Maria Rita" uniqKey="Castrucci M" first="Maria Rita" last="Castrucci">Maria Rita Castrucci</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1">Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome</wicri:regionArea>
<placeName>
<settlement type="city">Rome</settlement>
<region nuts="2">Latium</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Lista, Florigio" sort="Lista, Florigio" uniqKey="Lista F" first="Florigio" last="Lista">Florigio Lista</name>
<affiliation wicri:level="3">
<nlm:aff id="aff2">Scientific Department Army Medical Center, Rome, Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Scientific Department Army Medical Center, Rome</wicri:regionArea>
<placeName>
<settlement type="city">Rome</settlement>
<region nuts="2">Latium</region>
</placeName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Eurosurveillance</title>
<idno type="ISSN">1025-496X</idno>
<idno type="eISSN">1560-7917</idno>
<imprint>
<date when="2020">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Betacoronavirus (genetics)</term>
<term>Betacoronavirus (isolation & purification)</term>
<term>China</term>
<term>Coronavirus (classification)</term>
<term>Coronavirus (genetics)</term>
<term>Coronavirus (isolation & purification)</term>
<term>Coronavirus Infections (diagnosis)</term>
<term>Coronavirus Infections (epidemiology)</term>
<term>Coronavirus Infections (transmission)</term>
<term>Genome, Viral (genetics)</term>
<term>Germany</term>
<term>Humans</term>
<term>Italy</term>
<term>Molecular Epidemiology</term>
<term>Pandemics</term>
<term>Phylogeny</term>
<term>Pneumonia, Viral (diagnosis)</term>
<term>Pneumonia, Viral (epidemiology)</term>
<term>Pneumonia, Viral (transmission)</term>
<term>Point Mutation</term>
<term>RNA, Viral (genetics)</term>
<term>RNA, Viral (isolation & purification)</term>
<term>Severe Acute Respiratory Syndrome (diagnosis)</term>
<term>Severe Acute Respiratory Syndrome (virology)</term>
<term>Travel</term>
<term>Whole Genome Sequencing (methods)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ARN viral (génétique)</term>
<term>ARN viral (isolement et purification)</term>
<term>Allemagne</term>
<term>Chine</term>
<term>Coronavirus ()</term>
<term>Coronavirus (génétique)</term>
<term>Coronavirus (isolement et purification)</term>
<term>Génome viral (génétique)</term>
<term>Humains</term>
<term>Infections à coronavirus (diagnostic)</term>
<term>Infections à coronavirus (transmission)</term>
<term>Infections à coronavirus (épidémiologie)</term>
<term>Italie</term>
<term>Mutation ponctuelle</term>
<term>Pandémies</term>
<term>Phylogénie</term>
<term>Pneumopathie virale (diagnostic)</term>
<term>Pneumopathie virale (transmission)</term>
<term>Pneumopathie virale (épidémiologie)</term>
<term>Syndrome respiratoire aigu sévère (diagnostic)</term>
<term>Syndrome respiratoire aigu sévère (virologie)</term>
<term>Voyage</term>
<term>Épidémiologie moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en">
<term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en">
<term>China</term>
<term>Germany</term>
<term>Italy</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnosis" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Pneumonia, Viral</term>
<term>Severe Acute Respiratory Syndrome</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnostic" xml:lang="fr">
<term>Infections à coronavirus</term>
<term>Pneumopathie virale</term>
<term>Syndrome respiratoire aigu sévère</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Pneumonia, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Betacoronavirus</term>
<term>Coronavirus</term>
<term>Genome, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ARN viral</term>
<term>Coronavirus</term>
<term>Génome viral</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Betacoronavirus</term>
<term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>ARN viral</term>
<term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Whole Genome Sequencing</term>
</keywords>
<keywords scheme="MESH" qualifier="transmission" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Pneumonia, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr">
<term>Syndrome respiratoire aigu sévère</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en">
<term>Severe Acute Respiratory Syndrome</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Infections à coronavirus</term>
<term>Pneumopathie virale</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Humans</term>
<term>Molecular Epidemiology</term>
<term>Pandemics</term>
<term>Phylogeny</term>
<term>Point Mutation</term>
<term>Travel</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Allemagne</term>
<term>Chine</term>
<term>Coronavirus</term>
<term>Humains</term>
<term>Italie</term>
<term>Mutation ponctuelle</term>
<term>Pandémies</term>
<term>Phylogénie</term>
<term>Voyage</term>
<term>Épidémiologie moléculaire</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr">
<term>République populaire de Chine</term>
<term>Allemagne</term>
<term>Italie</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient’s sequence clustered with sequences from Germany while the tourist’s sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients’ sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.</p>
</div>
</front>
<back>
<div1 type="bibliography">
<listBibl>
<biblStruct>
<analytic>
<author>
<name sortKey="Wu, P" uniqKey="Wu P">P Wu</name>
</author>
<author>
<name sortKey="Hao, X" uniqKey="Hao X">X Hao</name>
</author>
<author>
<name sortKey="Lau, Ehy" uniqKey="Lau E">EHY Lau</name>
</author>
<author>
<name sortKey="Wong, Jy" uniqKey="Wong J">JY Wong</name>
</author>
<author>
<name sortKey="Leung, Ksm" uniqKey="Leung K">KSM Leung</name>
</author>
<author>
<name sortKey="Wu, Jt" uniqKey="Wu J">JT Wu</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Kearse, M" uniqKey="Kearse M">M Kearse</name>
</author>
<author>
<name sortKey="Moir, R" uniqKey="Moir R">R Moir</name>
</author>
<author>
<name sortKey="Wilson, A" uniqKey="Wilson A">A Wilson</name>
</author>
<author>
<name sortKey="Stones Havas, S" uniqKey="Stones Havas S">S Stones-Havas</name>
</author>
<author>
<name sortKey="Cheung, M" uniqKey="Cheung M">M Cheung</name>
</author>
<author>
<name sortKey="Sturrock, S" uniqKey="Sturrock S">S Sturrock</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name>
</author>
<author>
<name sortKey="Stecher, G" uniqKey="Stecher G">G Stecher</name>
</author>
<author>
<name sortKey="Li, M" uniqKey="Li M">M Li</name>
</author>
<author>
<name sortKey="Knyaz, C" uniqKey="Knyaz C">C Knyaz</name>
</author>
<author>
<name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Phan, T" uniqKey="Phan T">T Phan</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations>
<list>
<country>
<li>Italie</li>
</country>
<region>
<li>Latium</li>
<li>Lombardie</li>
</region>
<settlement>
<li>Milan</li>
<li>Rome</li>
</settlement>
</list>
<tree>
<country name="Italie">
<region name="Latium">
<name sortKey="Stefanelli, Paola" sort="Stefanelli, Paola" uniqKey="Stefanelli P" first="Paola" last="Stefanelli">Paola Stefanelli</name>
</region>
<name sortKey="Anselmo, Anna" sort="Anselmo, Anna" uniqKey="Anselmo A" first="Anna" last="Anselmo">Anna Anselmo</name>
<name sortKey="Benedetti, Eleonora" sort="Benedetti, Eleonora" uniqKey="Benedetti E" first="Eleonora" last="Benedetti">Eleonora Benedetti</name>
<name sortKey="Capobianchi, Maria Rosaria" sort="Capobianchi, Maria Rosaria" uniqKey="Capobianchi M" first="Maria Rosaria" last="Capobianchi">Maria Rosaria Capobianchi</name>
<name sortKey="Castrucci, Maria Rita" sort="Castrucci, Maria Rita" uniqKey="Castrucci M" first="Maria Rita" last="Castrucci">Maria Rita Castrucci</name>
<name sortKey="Ciammaruconi, Andrea" sort="Ciammaruconi, Andrea" uniqKey="Ciammaruconi A" first="Andrea" last="Ciammaruconi">Andrea Ciammaruconi</name>
<name sortKey="Ciervo, Alessandra" sort="Ciervo, Alessandra" uniqKey="Ciervo A" first="Alessandra" last="Ciervo">Alessandra Ciervo</name>
<name sortKey="De Santis, Riccardo" sort="De Santis, Riccardo" uniqKey="De Santis R" first="Riccardo" last="De Santis">Riccardo De Santis</name>
<name sortKey="Fabiani, Concetta" sort="Fabiani, Concetta" uniqKey="Fabiani C" first="Concetta" last="Fabiani">Concetta Fabiani</name>
<name sortKey="Faggioni, Giovanni" sort="Faggioni, Giovanni" uniqKey="Faggioni G" first="Giovanni" last="Faggioni">Giovanni Faggioni</name>
<name sortKey="Fillo, Silvia" sort="Fillo, Silvia" uniqKey="Fillo S" first="Silvia" last="Fillo">Silvia Fillo</name>
<name sortKey="Fiore, Stefano" sort="Fiore, Stefano" uniqKey="Fiore S" first="Stefano" last="Fiore">Stefano Fiore</name>
<name sortKey="Fortunato, Antonella" sort="Fortunato, Antonella" uniqKey="Fortunato A" first="Antonella" last="Fortunato">Antonella Fortunato</name>
<name sortKey="Gismondo, Maria Rita" sort="Gismondo, Maria Rita" uniqKey="Gismondo M" first="Maria Rita" last="Gismondo">Maria Rita Gismondo</name>
<name sortKey="Lista, Florigio" sort="Lista, Florigio" uniqKey="Lista F" first="Florigio" last="Lista">Florigio Lista</name>
<name sortKey="Lo Presti, Alessandra" sort="Lo Presti, Alessandra" uniqKey="Lo Presti A" first="Alessandra" last="Lo Presti">Alessandra Lo Presti</name>
<name sortKey="Marchi, Antonella" sort="Marchi, Antonella" uniqKey="Marchi A" first="Antonella" last="Marchi">Antonella Marchi</name>
<name sortKey="Rezza, Giovanni" sort="Rezza, Giovanni" uniqKey="Rezza G" first="Giovanni" last="Rezza">Giovanni Rezza</name>
</country>
</tree>
</affiliations>
</record>

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